About the author
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Introduction
1.
R: A Brief Overview
1.1.
What is R?
1.2.
A Collection of Useful Resources
1.3.
Required software
1.4.
Package Repositories
1.5.
Learning R
1.6.
Asking Questions
2.
Installing R
2.1.
Windows
2.2.
Linux
2.3.
Mac
2.4.
Installing Packages
2.5.
Installing Bioconductor
2.6.
Updating Packages
2.7.
R Development Version
2.8.
Troubleshooting
3.
An Introduction to RStudio
3.1.
Download & Installation
3.2.
Navigating RStudio
3.3.
Working Directories, .RData & .Rhistory
3.4.
Code Completion: Tab becomes your best friend
3.5.
Retrieving Previous Commands
3.6.
RStudio Library & Package Management
3.7.
Getting Help
3.8.
RStudio Keyboard Shortcuts
4.
A brief introduction to R language
5.
Data Management in R
6.
Basic Statistical methods
7.
Basic Plotting/Graphing in R
8.
Bioconductor
8.1.
An Introduction to Bioconductor
9.
Advanced Issues
10.
Afterword
11.
Cheat Sheet
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An Introduction to R and RStudio
Working Directories, .RData & .Rhistory